@Brandi phil,
Most lecture notes are generally paraphrases of lectures and border therefore on original work by the note taker; where exact phrases or sentences were transcribed, they can be cited as any public lecture would be.
Citations of Descartes are generally made using the pagination of the Adams & Tannery edition, and is shown in the margins of most scholarly translations. Your first citation should, though, also include the information of the translation you are using.
More often than not, citations serve two purposes: first, they allow a reader to verify the quotation, and second, to show its textual place in the philosopher's argumentation.
One can assume that the reader is acquainted with Cartesian terminology (e.g.,"the cogito", "thinking substance") so unless the precise term or phrase is important to your analysis or argument, it need not be footnoted.